Prop3D
latest

Getting Started

  • Home
  • Meadowlark: Structure Processing Workflow
  • Features
  • Prop3D Dataset Organization
  • Pre-computed Datasets

Installation

  • Basic Installation
  • Highly Scalable Data Service (HSDS)
  • Install Pre-computed Dataset

Build Dataset

  • AtomicToil: Massively-parallel workflow
  • Create Custom Featurizers
  • Create Simple Featurizers

Use Dataset

  • Simple
  • PyTorch: Prop3D with Language Models (ESM)
  • PyTorch: Prop3D with Graphs (ProteinMPNN)
  • PyTorch: Prop3D with 3D Structures (MinkowsiEngine)

API Reference

  • Prop3D.common package
  • Prop3D.generate_data package
  • Prop3D.parsers package
  • Prop3D.util package
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