Prop3D

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Getting Started

Home
Meadowlark: Structure Processing Workflow
Features
Prop3D Dataset Organization
Pre-computed Datasets

Installation

Basic Installation
Highly Scalable Data Service (HSDS)
Install Pre-computed Dataset

Build Dataset

AtomicToil: Massively-parallel workflow
Create Custom Featurizers
Create Simple Featurizers

Use Dataset

Simple
PyTorch: Prop3D with Language Models (ESM)
PyTorch: Prop3D with Graphs (ProteinMPNN)
PyTorch: Prop3D with 3D Structures (MinkowsiEngine)

API Reference

Prop3D.common package
Prop3D.generate_data package
Prop3D.parsers package
Prop3D.util package

Prop3D

Prop3D.parsers package
Prop3D.parsers.superpose package
Edit on GitHub

Prop3D.parsers.superpose package

Submodules

Prop3D.parsers.superpose.mtmalign module

Prop3D.parsers.superpose.tmalign module

Module contents

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